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  2022 (4)
Demographic history and natural selection shape patterns of deleterious mutation load and barriers to introgression across Populus genome. Liu, S.; Zhang, L.; Sang, Y.; Lai, Q.; Zhang, X.; Jia, C.; Long, Z.; Wu, J.; Ma, T.; Mao, K.; Street, N. R; Ingvarsson, P. K; Liu, J.; and Wang, J. Molecular Biology and Evolution, 39(2): msac008. January 2022.
Demographic history and natural selection shape patterns of deleterious mutation load and barriers to introgression across Populus genome [link]Paper   doi   link   bibtex   abstract  
Molecular basis of differential adventitious rooting competence in poplar genotypes. Ranjan, A.; Perrone, I.; Alallaq, S.; Singh, R.; Rigal, A.; Brunoni, F.; Chitarra, W.; Guinet, F.; Kohler, A.; Martin, F.; Street, N. R; Bhalerao, R.; Legué, V.; and Bellini, C. Journal of Experimental Botany, 73(12): 4046–4064. June 2022.
Molecular basis of differential adventitious rooting competence in poplar genotypes [link]Paper   doi   link   bibtex   abstract  
Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests. Law, S. R.; Serrano, A. R.; Daguerre, Y.; Sundh, J.; Schneider, A. N.; Stangl, Z. R.; Castro, D.; Grabherr, M.; Näsholm, T.; Street, N. R.; and Hurry, V. Proceedings of the National Academy of Sciences, 119(26): e2118852119. June 2022.
Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests [link]Paper   doi   link   bibtex   abstract  
Norway spruce deploys tissue-specific responses during acclimation to cold. Vergara, A.; Haas, J. C.; Aro, T.; Stachula, P.; Street, N. R.; and Hurry, V. Plant, Cell & Environment, 45(2). February 2022.
Norway spruce deploys tissue-specific responses during acclimation to cold [link]Paper   doi   link   bibtex   abstract  
  2021 (7)
Candidate regulators and target genes of drought stress in needles and roots of Norway spruce. Haas, J. C; Vergara, A.; Serrano, A. R; Mishra, S.; Hurry, V.; and Street, N. R Tree Physiology, 41(7): 1230–1246. July 2021.
Candidate regulators and target genes of drought stress in needles and roots of Norway spruce [link]Paper   doi   link   bibtex   abstract  
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce. Schneider, A. N.; Sundh, J.; Sundström, G.; Richau, K.; Delhomme, N.; Grabherr, M.; Hurry, V.; and Street, N. R. mSystems, 6(1). February 2021.
Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce [link]Paper   doi   link   bibtex   abstract  
Adaptive introgression facilitate adaptation to high latitudes in European aspen (Populus tremula L.). Rendón-Anaya, M.; Wilson, J.; Sveinsson, S.; Fedorkov, A.; Cottrell, J.; Bailey, M. E. S.; Ruņģis, D.; Lexer, C.; Jansson, S.; Robinson, K. M.; Street, N. R.; and Ingvarsson, P. K. Molecular Biology and Evolution, 38(11): 5034–5050. July 2021.
Adaptive introgression facilitate adaptation to high latitudes in European aspen (Populus tremula L.) [link]Paper   doi   link   bibtex   abstract  
Effects of Early, Small-Scale Nitrogen Addition on Germination and Early Growth of Scots Pine (Pinus sylvestris) Seedlings and on the Recruitment of the Root-Associated Fungal Community. Castro, D.; Schneider, A. N.; Holmlund, M.; Näsholm, T.; Street, N. R.; and Hurry, V. Forests, 12(11): 1589. November 2021.
Effects of Early, Small-Scale Nitrogen Addition on Germination and Early Growth of Scots Pine (Pinus sylvestris) Seedlings and on the Recruitment of the Root-Associated Fungal Community [link]Paper   doi   link   bibtex   abstract  
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE). Christie, N.; Mannapperuma, C.; Ployet, R.; van der Merwe, K.; Mähler, N.; Delhomme, N.; Naidoo, S.; Mizrachi, E.; Street, N. R.; and Myburg, A. A. BMC Bioinformatics, 22(1): 595. December 2021.
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE) [link]Paper   doi   link   bibtex   abstract  
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance. Liu, H.; Yan, X.; Wang, X.; Zhang, D.; Zhou, Q.; Shi, T.; Jia, K.; Tian, X.; Zhou, S.; Zhang, R.; Yun, Q.; Wang, Q.; Xiang, Q.; Mannapperuma, C.; Van Zalen, E.; Street, N. R.; Porth, I.; El-Kassaby, Y. A.; Zhao, W.; Wang, X.; Guan, W.; and Mao, J. Frontiers in Plant Science, 12: 2546. 2021.
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance [link]Paper   doi   link   bibtex   abstract  
The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii. Shen, D.; Holmer, R.; Kulikova, O.; Mannapperuma, C.; Street, N. R.; Yan, Z.; Maden, T.; Bu, F.; Zhang, Y.; Geurts, R.; and Magne, K. The Plant Journal,tpj.15242. April 2021.
The BOP‐type co‐transcriptional regulator NODULE ROOT1 promotes stem secondary growth of the tropical Cannabaceae tree Parasponia andersonii [link]Paper   doi   link   bibtex  
  2020 (7)
Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen ( Populus tremula ). Apuli, R.; Bernhardsson, C.; Schiffthaler, B.; Robinson, K. M; Jansson, S.; Street, N. R; and Ingvarsson, P. K G3 Genes\textbarGenomes\textbarGenetics, 10(1): 299–309. January 2020.
Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen ( Populus tremula ) [link]Paper   doi   link   bibtex   abstract  
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants. Sullivan, A. R; Eldfjell, Y.; Schiffthaler, B.; Delhomme, N.; Asp, T.; Hebelstrup, K. H; Keech, O.; Öberg, L.; Møller, I. M.; Arvestad, L.; Street, N. R; and Wang, X. Genome Biology and Evolution, 12(1): 3586–3598. January 2020.
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants [link]Paper   doi   link   bibtex   abstract  
A metabolite roadmap of the wood‐forming tissue in Populus tremula. Abreu, I. N.; Johansson, A. I.; Sokołowska, K.; Niittylä, T.; Sundberg, B.; Hvidsten, T. R.; Street, N. R.; and Moritz, T. New Phytologist, 228(5): 1559–1572. December 2020.
A metabolite roadmap of the wood‐forming tissue in Populus tremula [link]Paper   doi   link   bibtex  
Leaf shape in Populus tremula is a complex, omnigenic trait. Mähler, N.; Schiffthaler, B.; Robinson, K. M.; Terebieniec, B. K.; Vučak, M.; Mannapperuma, C.; Bailey, M. E. S.; Jansson, S.; Hvidsten, T. R.; and Street, N. R. Ecology and Evolution, 10(21): 11922–11940. November 2020.
Leaf shape in Populus tremula is a complex, omnigenic trait [link]Paper   doi   link   bibtex  
A single gene underlies the dynamic evolution of poplar sex determination. Müller, N. A.; Kersten, B.; Leite Montalvão, A. P.; Mähler, N.; Bernhardsson, C.; Bräutigam, K.; Carracedo Lorenzo, Z.; Hoenicka, H.; Kumar, V.; Mader, M.; Pakull, B.; Robinson, K. M.; Sabatti, M.; Vettori, C.; Ingvarsson, P. K.; Cronk, Q.; Street, N. R.; and Fladung, M. Nature Plants, 6(6): 630–637. June 2020.
A single gene underlies the dynamic evolution of poplar sex determination [link]Paper   doi   link   bibtex  
Chromosome-level genome assembly of a parent species of widely cultivated azaleas. Yang, F.; Nie, S.; Liu, H.; Shi, T.; Tian, X.; Zhou, S.; Bao, Y.; Jia, K.; Guo, J.; Zhao, W.; An, N.; Zhang, R.; Yun, Q.; Wang, X.; Mannapperuma, C.; Porth, I.; El-Kassaby, Y. A.; Street, N. R.; Wang, X.; Van de Peer, Y.; and Mao, J. Nature Communications, 11(1): 5269. December 2020.
Chromosome-level genome assembly of a parent species of widely cultivated azaleas [link]Paper   doi   link   bibtex   abstract  
Evidence for widespread selection in shaping the genomic landscape during speciation of Populus. Wang, J.; Street, N. R.; Park, E.; Liu, J.; and Ingvarsson, P. K. Molecular Ecology, 29(6): 1120–1136. March 2020.
Evidence for widespread selection in shaping the genomic landscape during speciation of Populus [link]Paper   doi   link   bibtex  
  2019 (8)
An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies ). Bernhardsson, C.; Vidalis, A.; Wang, X.; Scofield, D. G; Schiffthaler, B.; Baison, J.; Street, N. R; García-Gil, M R.; and Ingvarsson, P. K G3 Genes\textbarGenomes\textbarGenetics, 9(5): 1623–1632. May 2019.
An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies ) [link]Paper   doi   link   bibtex   abstract  
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. Wegrzyn, J. L.; Staton, M. A.; Street, N. R.; Main, D.; Grau, E.; Herndon, N.; Buehler, S.; Falk, T.; Zaman, S.; Ramnath, R.; Richter, P.; Sun, L.; Condon, B.; Almsaeed, A.; Chen, M.; Mannapperuma, C.; Jung, S.; and Ficklin, S. Frontiers in Plant Science, 10: 813. June 2019.
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment [link]Paper   doi   link   bibtex  
Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks. Myburg, A. A.; Hussey, S. G.; Wang, J. P.; Street, N. R.; and Mizrachi, E. Frontiers in Plant Science, 10: 775. June 2019.
Systems and Synthetic Biology of Forest Trees: A Bioengineering Paradigm for Woody Biomass Feedstocks [link]Paper   doi   link   bibtex  
Why does nitrogen addition to forest soils inhibit decomposition?. Bonner, M. T.; Castro, D.; Schneider, A. N.; Sundström, G.; Hurry, V.; Street, N. R.; and Näsholm, T. Soil Biology and Biochemistry, 137: 107570. October 2019.
Why does nitrogen addition to forest soils inhibit decomposition? [link]Paper   doi   link   bibtex  
Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce. Blokhina, O.; Laitinen, T.; Hatakeyama, Y.; Delhomme, N.; Paasela, T.; Zhao, L.; Street, N. R.; Wada, H.; Kärkönen, A.; and Fagerstedt, K. Plant Physiology, 181(4): 1552–1572. December 2019.
Ray Parenchymal Cells Contribute to Lignification of Tracheids in Developing Xylem of Norway Spruce [link]Paper   doi   link   bibtex  
Genomics of forest trees. Street, N. R. In Advances in Botanical Research, volume 89, pages 1–37. Elsevier, 2019.
Genomics of forest trees [link]Paper   doi   link   bibtex  
High Spatial Resolution Profiling in Tree Species. Giacomello, S.; Delhomme, N.; Niittylä, T.; Tuominen, H.; and Street, N. R. In Annual Plant Reviews online, pages 329–360. American Cancer Society, 2019. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/9781119312994.apr0688
High Spatial Resolution Profiling in Tree Species [link]Paper   doi   link   bibtex   abstract  
Poplar carbohydrate‐active enzymes: whole‐genome annotation and functional analyses based on RNA expression data. Kumar, V.; Hainaut, M.; Delhomme, N.; Mannapperuma, C.; Immerzeel, P.; Street, N. R.; Henrissat, B.; and Mellerowicz, E. J. The Plant Journal, 99(4): 589–609. August 2019.
Poplar carbohydrate‐active enzymes: whole‐genome annotation and functional analyses based on RNA expression data [link]Paper   doi   link   bibtex  
  2018 (8)
Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies. Akhter, S.; Kretzschmar, W. W.; Nordal, V.; Delhomme, N.; Street, N. R.; Nilsson, O.; Emanuelsson, O.; and Sundström, J. F. Frontiers in Plant Science, 9: 1625. November 2018.
Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies [link]Paper   doi   link   bibtex  
Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome. Ratke, C.; Terebieniec, B. K.; Winestrand, S.; Derba-Maceluch, M.; Grahn, T.; Schiffthaler, B.; Ulvcrona, T.; Özparpucu, M.; Rüggeberg, M.; Lundqvist, S.; Street, N. R.; Jönsson, L. J.; and Mellerowicz, E. J. New Phytologist, 219(1): 230–245. July 2018.
Downregulating aspen xylan biosynthetic GT43 genes in developing wood stimulates growth via reprograming of the transcriptome [link]Paper   doi   link   bibtex  
Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death. Reza, S. H.; Delhomme, N.; Street, N. R.; Ramachandran, P.; Dalman, K.; Nilsson, O.; Minina, E. A.; and Bozhkov, P. V. PLOS ONE, 13(3): e0192945. March 2018.
Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death [link]Paper   doi   link   bibtex  
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. Lin, Y.; Wang, J.; Delhomme, N.; Schiffthaler, B.; Sundström, G.; Zuccolo, A.; Nystedt, B.; Hvidsten, T. R.; de la Torre, A.; Cossu, R. M.; Hoeppner, M. P.; Lantz, H.; Scofield, D. G.; Zamani, N.; Johansson, A.; Mannapperuma, C.; Robinson, K. M.; Mähler, N.; Leitch, I. J.; Pellicer, J.; Park, E.; Van Montagu, M.; Van de Peer, Y.; Grabherr, M.; Jansson, S.; Ingvarsson, P. K.; and Street, N. R. Proceedings of the National Academy of Sciences, 115(46): E10970–E10978. November 2018.
Functional and evolutionary genomic inferences in <i>Populus</i> through genome and population sequencing of American and European aspen [link]Paper   doi   link   bibtex   abstract  
Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest. Haas, J. C.; Street, N. R.; Sjödin, A.; Lee, N. M.; Högberg, M. N.; Näsholm, T.; and Hurry, V. Soil Biology and Biochemistry, 125: 197–209. October 2018.
Microbial community response to growing season and plant nutrient optimisation in a boreal Norway spruce forest [link]Paper   doi   link   bibtex  
Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen. Grimberg, Å.; Lager, I.; Street, N. R.; Robinson, K. M.; Marttila, S.; Mähler, N.; Ingvarsson, P. K.; and Bhalerao, R. P. New Phytologist, 219(2): 619–630. July 2018.
Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen [link]Paper   doi   link   bibtex  
Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce. Jokipii-Lukkari, S.; Delhomme, N.; Schiffthaler, B.; Mannapperuma, C.; Prestele, J.; Nilsson, O.; Street, N. R.; and Tuominen, H. Plant Physiology, 176(4): 2851–2870. April 2018.
Transcriptional Roadmap to Seasonal Variation in Wood Formation of Norway Spruce [link]Paper   doi   link   bibtex  
A major locus controls local adaptation and adaptive life history variation in a perennial plant. Wang, J.; Ding, J.; Tan, B.; Robinson, K. M.; Michelson, I. H.; Johansson, A.; Nystedt, B.; Scofield, D. G.; Nilsson, O.; Jansson, S.; Street, N. R.; and Ingvarsson, P. K. Genome Biology, 19(1): 72. December 2018.
A major locus controls local adaptation and adaptive life history variation in a perennial plant [link]Paper   doi   link   bibtex  
  2017 (8)
Gene co-expression network connectivity is an important determinant of selective constraint. Mähler, N.; Wang, J.; Terebieniec, B. K.; Ingvarsson, P. K.; Street, N. R.; and Hvidsten, T. R. PLOS Genetics, 13(4): e1006402. April 2017.
Gene co-expression network connectivity is an important determinant of selective constraint [link]Paper   doi   link   bibtex  
Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations. Norman, A. J.; Stronen, A. V.; Fuglstad, G.; Ruiz-Gonzalez, A.; Kindberg, J.; Street, N. R.; and Spong, G. Landscape Ecology, 32(1): 181–194. January 2017.
Landscape relatedness: detecting contemporary fine-scale spatial structure in wild populations [link]Paper   doi   link   bibtex  
Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae). Sullivan, A. R.; Schiffthaler, B.; Thompson, S. L.; Street, N. R.; and Wang, X. Molecular Biology and Evolution, 34(7): 1689–1701. July 2017.
Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae) [link]Paper   doi   link   bibtex  
NorWood: a gene expression resource for evo‐devo studies of conifer wood development. Jokipii‐Lukkari, S.; Sundell, D.; Nilsson, O.; Hvidsten, T. R.; Street, N. R.; and Tuominen, H. New Phytologist, 216(2): 482–494. October 2017.
NorWood: a gene expression resource for evo‐devo studies of conifer wood development [link]Paper   doi   link   bibtex  
Spatially resolved transcriptome profiling in model plant species. Giacomello, S.; Salmén, F.; Terebieniec, B. K.; Vickovic, S.; Navarro, J. F.; Alexeyenko, A.; Reimegård, J.; McKee, L. S.; Mannapperuma, C.; Bulone, V.; Ståhl, P. L.; Sundström, J. F.; Street, N. R.; and Lundeberg, J. Nature Plants, 3(6): 17061. June 2017.
Spatially resolved transcriptome profiling in model plant species [link]Paper   doi   link   bibtex  
BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species. Schiffthaler, B.; Bernhardsson, C.; Ingvarsson, P. K.; and Street, N. R. PLOS ONE, 12(12): e0189256. December 2017.
BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species [link]Paper   doi   link   bibtex  
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula. Sundell, D.; Street, N. R.; Kumar, M.; Mellerowicz, E. J.; Kucukoglu, M.; Johnsson, C.; Kumar, V.; Mannapperuma, C.; Delhomme, N.; Nilsson, O.; Tuominen, H.; Pesquet, E.; Fischer, U.; Niittylä, T.; Sundberg, B.; and Hvidsten, T. R. The Plant Cell, 29(7): 1585–1604. July 2017.
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula [link]Paper   doi   link   bibtex  
A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism. Laitinen, T.; Morreel, K.; Delhomme, N.; Gauthier, A.; Schiffthaler, B.; Nickolov, K.; Brader, G.; Lim, K.; Teeri, T. H.; Street, N. R.; Boerjan, W.; and Kärkönen, A. Plant Physiology, 174(3): 1449–1475. July 2017.
A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism [link]Paper   doi   link   bibtex  
  2016 (4)
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity. Immanen, J.; Nieminen, K.; Smolander, O.; Kojima, M.; Alonso Serra, J.; Koskinen, P.; Zhang, J.; Elo, A.; Mähönen, A.; Street, N.; Bhalerao, R.; Paulin, L.; Auvinen, P.; Sakakibara, H.; and Helariutta, Y. Current Biology, 26(15): 1990–1997. August 2016.
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity [link]Paper   doi   link   bibtex  
Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species. Wang, J.; Street, N. R; Scofield, D. G; and Ingvarsson, P. K Genetics, 202(3): 1185–1200. March 2016.
Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species [link]Paper   doi   link   bibtex   abstract  
Towards integration of population and comparative genomics in forest trees. Ingvarsson, P. K.; Hvidsten, T. R.; and Street, N. R. New Phytologist, 212(2): 338–344. October 2016.
Towards integration of population and comparative genomics in forest trees [link]Paper   doi   link   bibtex  
DNA methylome of the 20-gigabase Norway spruce genome. Ausin, I.; Feng, S.; Yu, C.; Liu, W.; Kuo, H. Y.; Jacobsen, E. L.; Zhai, J.; Gallego-Bartolome, J.; Wang, L.; Egertsdotter, U.; Street, N. R.; Jacobsen, S. E.; and Wang, H. Proceedings of the National Academy of Sciences, 113(50): E8106–E8113. December 2016.
DNA methylome of the 20-gigabase Norway spruce genome [link]Paper   doi   link   bibtex   abstract  
  2015 (5)
Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens. Soolanayakanahally, R. Y.; Guy, R. D.; Street, N. R.; Robinson, K. M.; Silim, S. N.; Albrectsen, B. R.; and Jansson, S. Front Plant Sci, 6: 528. 2015. Edition: 2015/08/04
Comparative physiology of allopatric Populus species: geographic clines in photosynthesis, height growth, and carbon isotope discrimination in common gardens [link]Paper   doi   link   bibtex   abstract  
Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens. Wang, J.; Street, N. R.; Scofield, D. G.; and Ingvarsson, P. K. Technical Report Evolutionary Biology, October 2015.
Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens [link]Paper   doi   link   bibtex   abstract  
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies). Delhomme, N.; Sundstrom, G.; Zamani, N.; Lantz, H.; Lin, Y. C.; Hvidsten, T. R.; Hoppner, M. P.; Jern, P.; Van de Peer, Y.; Lundeberg, J.; Grabherr, M. G.; and Street, N. R. PLoS One, 10(9): e0139080. September 2015. Edition: 2015/09/29
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies) [link]Paper   doi   link   bibtex   abstract  
A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus. Liu, L.; Ramsay, T.; Zinkgraf, M.; Sundell, D.; Street, N. R.; Filkov, V.; and Groover, A. Plant J, 82(5): 887–98. June 2015. Edition: 2015/04/24
A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus [link]Paper   doi   link   bibtex   abstract  
The Plant Genome Integrative Explorer Resource: PlantGenIE.org. Sundell, D.; Mannapperuma, C.; Netotea, S.; Delhomme, N.; Lin, Y. C.; Sjodin, A.; Van de Peer, Y.; Jansson, S.; Hvidsten, T. R.; and Street, N. R. New Phytol, 208(4): 1149–56. December 2015. Edition: 2015/07/21
The Plant Genome Integrative Explorer Resource: PlantGenIE.org [link]Paper   doi   link   bibtex   abstract  
  2014 (3)
Insights into Conifer Giga-Genomes. De La Torre, A. R.; Birol, I.; Bousquet, J.; Ingvarsson, P. K.; Jansson, S.; Jones, S. J.; Keeling, C. I.; MacKay, J.; Nilsson, O.; Ritland, K.; Street, N.; Yanchuk, A.; Zerbe, P.; and Bohlmann, J. Plant Physiology, 166(4): 1724–1732. December 2014.
Insights into Conifer Giga-Genomes [link]Paper   doi   link   bibtex  
Populus tremula (European aspen) shows no evidence of sexual dimorphism. Robinson, K. M; Delhomme, N.; Mähler, N.; Schiffthaler, B.; Önskog, J.; Albrectsen, B. R; Ingvarsson, P. K; Hvidsten, T. R; Jansson, S.; and Street, N. R BMC Plant Biology, 14(1): 276. December 2014.
Populus tremula (European aspen) shows no evidence of sexual dimorphism [link]Paper   doi   link   bibtex  
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. Netotea, S.; Sundell, D.; Street, N. R; and Hvidsten, T. R BMC Genomics, 15(1): 106. 2014.
ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa [link]Paper   doi   link   bibtex  
  2013 (3)
Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state. Lafon‐Placette, C.; Faivre‐Rampant, P.; Delaunay, A.; Street, N.; Brignolas, F.; and Maury, S. New Phytologist, 197(2): 416–430. January 2013.
Methylome of DNase I sensitive chromatin in Populus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene-body DNA methylation in open chromatin state [link]Paper   doi   link   bibtex  
The Norway spruce genome sequence and conifer genome evolution. Nystedt, B.; Street, N. R.; Wetterbom, A.; Zuccolo, A.; Lin, Y.; Scofield, D. G.; Vezzi, F.; Delhomme, N.; Giacomello, S.; Alexeyenko, A.; Vicedomini, R.; Sahlin, K.; Sherwood, E.; Elfstrand, M.; Gramzow, L.; Holmberg, K.; Hällman, J.; Keech, O.; Klasson, L.; Koriabine, M.; Kucukoglu, M.; Käller, M.; Luthman, J.; Lysholm, F.; Niittylä, T.; Olson, Å.; Rilakovic, N.; Ritland, C.; Rosselló, J. A.; Sena, J.; Svensson, T.; Talavera-López, C.; Theißen, G.; Tuominen, H.; Vanneste, K.; Wu, Z.; Zhang, B.; Zerbe, P.; Arvestad, L.; Bhalerao, R. P.; Bohlmann, J.; Bousquet, J.; Garcia Gil, R.; Hvidsten, T. R.; de Jong, P.; MacKay, J.; Morgante, M.; Ritland, K.; Sundberg, B.; Lee Thompson, S.; Van de Peer, Y.; Andersson, B.; Nilsson, O.; Ingvarsson, P. K.; Lundeberg, J.; and Jansson, S. Nature, 497(7451): 579–584. May 2013.
The Norway spruce genome sequence and conifer genome evolution [link]Paper   doi   link   bibtex  
De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos). Norman, A. J.; Street, N. R.; and Spong, G. PLoS ONE, 8(11): e81012. November 2013.
De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos) [link]Paper   doi   link   bibtex  
  2012 (4)
Paramutation-Like Interaction of T-DNA Loci in Arabidopsis. Xue, W.; Ruprecht, C.; Street, N.; Hematy, K.; Chang, C.; Frommer, W. B.; Persson, S.; and Niittylä, T. PLoS ONE, 7(12): e51651. December 2012.
Paramutation-Like Interaction of T-DNA Loci in Arabidopsis [link]Paper   doi   link   bibtex  
The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis. Tuskan, G. A.; DiFazio, S.; Faivre-Rampant, P.; Gaudet, M.; Harfouche, A.; Jorge, V.; Labbé, J. L.; Ranjan, P.; Sabatti, M.; Slavov, G.; Street, N.; Tschaplinski, T. J.; and Yin, T. Tree Genetics & Genomes, 8(3): 559–571. June 2012.
The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis [link]Paper   doi   link   bibtex   abstract  
Improved gap size estimation for scaffolding algorithms. Sahlin, K.; Street, N.; Lundeberg, J.; and Arvestad, L. Bioinformatics, 28(17): 2215–2222. September 2012.
Improved gap size estimation for scaffolding algorithms [link]Paper   doi   link   bibtex  
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. Păcurar, D. I.; Păcurar, M. L.; Street, N.; Bussell, J. D.; Pop, T. I.; Gutierrez, L.; and Bellini, C. Journal of Experimental Botany, 63(7): 2491–2501. April 2012.
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions [link]Paper   doi   link   bibtex  
  2011 (2)
A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation. Street, N. R.; Jansson, S.; and Hvidsten, T. R. BMC Plant Biology, 11(1): 13. January 2011.
A systems biology model of the regulatory network in Populusleaves reveals interacting regulators and conserved regulation [link]Paper   doi   link   bibtex   abstract  
Association genetics of complex traits in plants. Ingvarsson, P. K.; and Street, N. R. New Phytologist, 189(4): 909–922. March 2011.
Association genetics of complex traits in plants [link]Paper   doi   link   bibtex  
  2009 (3)
Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci. Rae, A. M.; Street, N. R.; Robinson, K. M.; Harris, N.; and Taylor, G. BMC Plant Biology, 9(1): 1–13. December 2009. Number: 1 Publisher: BioMed Central
Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci [link]Paper   doi   link   bibtex   abstract  
Genome-wide profiling of populus small RNAs. Klevebring, D.; Street, N. R.; Fahlgren, N.; Kasschau, K. D.; Carrington, J. C.; Lundeberg, J.; and Jansson, S. BMC genomics, 10: 620. December 2009.
doi   link   bibtex   abstract  
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. Sjödin, A.; Street, N. R.; Sandberg, G.; Gustafsson, P.; and Jansson, S. New Phytologist, 182(4): 1013–1025. June 2009.
The <i>Populus</i> Genome Integrative Explorer (PopGenIE): a new resource for exploring the <i>Populus</i> genome [link]Paper   doi   link   bibtex  
  2008 (2)
A cross-species transcriptomics approach to identify genes involved in leaf development. Street, N.; Sjödin, A.; Bylesjö, M.; Gustafsson, P.; Trygg, J.; and Jansson, S. BMC Genomics, 9(1): 589. 2008.
A cross-species transcriptomics approach to identify genes involved in leaf development [link]Paper   doi   link   bibtex  
LAMINA: a tool for rapid quantification of leaf size and shape parameters. Bylesjö, M.; Segura, V.; Soolanayakanahally, R. Y; Rae, A. M; Trygg, J.; Gustafsson, P.; Jansson, S.; and Street, N. R BMC Plant Biology, 8(1): 82. 2008.
LAMINA: a tool for rapid quantification of leaf size and shape parameters [link]Paper   doi   link   bibtex  
  2006 (1)
The genetics and genomics of the drought response in Populus. Street, N. R.; Skogström, O.; Sjödin, A.; Tucker, J.; Rodríguez-Acosta, M.; Nilsson, P.; Jansson, S.; and Taylor, G. The Plant Journal, 48(3): 321–341. 2006. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-313X.2006.02864.x
The genetics and genomics of the drought response in Populus [link]Paper   doi   link   bibtex   abstract  
  2005 (1)
The transcriptome of Populus in elevated CO2. Taylor, G.; Street, N. R.; Tricker, P. J.; Sjödin, A.; Graham, L.; Skogström, O.; Calfapietra, C.; Scarascia-Mugnozza, G.; and Jansson, S. New Phytologist, 167(1): 143–154. 2005. _eprint: https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/j.1469-8137.2005.01450.x
The transcriptome of Populus in elevated CO2 [link]Paper   doi   link   bibtex   abstract  
  2004 (1)
Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar. Rae, A M; Robinson, K M; Street, N R; and Taylor, G Canadian Journal of Forest Research, 34(7): 1488–1498. July 2004. Publisher: NRC Research Press
Morphological and physiological traits influencing biomass productivity in short-rotation coppice poplar [link]Paper   doi   link   bibtex